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Sequence Alignment

Sequence Alignment

 

The following alignment image image was generated after direct sequencing from PCR products using template genomic DNA extracted from the following buffy coat fractions;

 

Reference Code
Ref in image
Chr$
NSFP0/0201
Sheep1a, Sheep1b
Scrapie ARQ,VRQ
NSFP0/0205
Sheep2a Sheep2b
Scrapie ARQ,VRQ
NSFZ0/0209
Sheep3a, Sheep3b
Ctrl ARR,ARQ

 

 

The image includes markers to localise the position of codon136, codon154 and codon171. A change in the relative last but one base is the position of the polymorphism.